PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g008400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 402aa    MW: 44888.3 Da    PI: 7.0571
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g008400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17136185155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen03g008400.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                       78*******************......55*************************98 PP

2AP243.38.8e-14228278155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Sopen03g008400.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 278
                       89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-15136193IPR016177DNA-binding domain
PROSITE profilePS5103217.635137193IPR001471AP2/ERF domain
SMARTSM003805.9E-31137199IPR001471AP2/ERF domain
CDDcd000187.18E-12137192No hitNo description
Gene3DG3DSA:3.30.730.101.4E-17137193IPR001471AP2/ERF domain
PfamPF008472.4E-9228278IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17228288IPR016177DNA-binding domain
CDDcd000186.93E-26228286No hitNo description
PROSITE profilePS5103215.672229286IPR001471AP2/ERF domain
SMARTSM003802.3E-31229292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-16229287IPR001471AP2/ERF domain
PRINTSPR003674.0E-6230241IPR001471AP2/ERF domain
PRINTSPR003674.0E-6268288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MWNLNDSPDQ TMEYESDEGI TVRSESNSIS SALLVVEDGN SSEEDGEKGK KKKSNDTPGK  60
IFGFSIKDHN LESPVVTRQF FPVDNESTNF PRAQWAGIKF CESEPPLVTG LVGNKIDVLQ  120
QQPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGAEADI NFTSEDYEDD LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKD AVTNFDRSIY ENELNSTECT  300
DNATDHNLDL SLGGSSQEMG DNRGQNSSSN LQLDGHWGNQ GSSRHNNKVQ TPSSNNVGQI  360
GGTSNSQNNY EIIATAAASS GFPQQIIRTQ NNGFHHNFMR PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6773820.0EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068150.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X2
SwissprotP479271e-127AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB2ZP480.0B2ZP48_SOLLC; APETALA2-like protein
STRINGSolyc03g044300.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-122AP2 family protein